CAS Center for Excellence in Animal Evolution and Genetics

HE Shunping

2019-03-07 | | 【Print】

Personal Data:

1997. Ph.D. Laboratory of General and Applied Ichthyology, National Museum of Natural History (MNHN), Paris, France.

1988. MS. Laboratory of Ichthyology, Institute of Hydrobiology, Chinese Academy of Science.

1983. BS. Department of Biology, Southwestern Norms University, Chongqing.

2002. National Outstanding Young Scientists Award. Grant of NSFC

2007. 100 Talents Program of the Chinese Academy of Sciences.

Research Experience:

1988-1991: Researcher Junior, Institute of Hydrobiology, Chinese Academy of Sciences.

1991-1995: Researcher Assistant, Institute of Hydrobiology, Chinese Academy of Science.

1995-1999: Researcher Associate, Institute of Hydrobiology, Chinese Academy of Science.

1999-present: Researcher Professorship, Institute of Hydrobiology, Chinese Academy of Science

Research Interest

Taxonomy and ontogeny of freshwater fishes;
·Molecular systematics, phylogeny, biogeography of the freshwater fishes in East Asia, especially Cypriniformes and Siluriformes;
·Molecular ecology and speciation of fishes;
·Evolution of important gene in osteichthysan fishes;
·Detection of SINE and its phylogenetic application in the family Cyprinidae;
·DNA barcoding of freshwater fishes;
·Phylogenomics and bioinformatics of fish genome.

Publications

[1] Yang, L. and S. He (2014). "A bioinformatics-based update on microRNAs and their targets in rainbow trout (Oncorhynchus mykiss)." Gene 533(1): 261-269.

　　[2] Yang, L., M. Zou, et al. (2013). "Genome-wide identification, characterization, and expression analysis of lineage-specific genes within zebrafish." Bmc Genomics 14.

　　[3] Tao, W., R. L. Mayden, et al. (2013). "Remarkable phylogenetic resolution of the most complex clade of Cyprinidae (Teleostei: Cypriniformes): A proof of concept of homology assessment and partitioning sequence data integrated with mixed model Bayesian analyses." Molecular Phylogenetics and Evolution 66(3): 603-616.

　　[4] Tao, W., J. Yuan, et al. (2013). "Characterization of Gonadal Transcriptomes from Nile Tilapia (Oreochromis niloticus) Reveals Differentially Expressed Genes." Plos One 8(5).

　　[5] Zou, M., B. Guo, et al. (2012). "Integrating multi-origin expression data improves the resolution of deep phylogeny of ray-finned fish (Actinopterygii)." Sci Rep 2.

　　[6] Fu, B. and S. He (2012). "Transcriptome Analysis of Silver Carp (Hypophthalmichthys molitrix) by Paired-End RNA Sequencing." DNA Research 19(2): 131-142.

　　[7] Chen, M., M. Zou, et al. (2011). "Evolutionary Patterns of RNA-Based Duplication in Non-Mammalian Chordates." Plos One 6(7).

　　[8] Fu, B., M. Chen, et al. (2010). "The rapid generation of chimerical genes expanding protein diversity in zebrafish." Bmc Genomics 11.

　　[9] Zhao, K., Z. Y. Duan, et al. (2009). "The youngest split in sympatric schizothoracine fish (Cyprinidae) is shaped by ecological adaptations in a Tibetan Plateau glacier lake." Mol Ecol 18(17): 3616-3628.

　　[10] Guo, B.C., Tong, C.B., He, S.P., 2009. Sox genes evolution in closely related young tetraploid cyprinid fishes and their diploid relative. Gene 439, 102-112.